AphidBase

This website will eventually house and link to all of the databases and resources developed by the International Aphid Genomics Consortium (IAGC). We will also endeavour to maintain links to additional resources for the study of aphid genomics.

At the moment you can access pea aphid genomic data through the resources listed below.

Sign up for the AphidGenomics List Server to keep up to date on Aphid Genomics


News

15 July 2008
Conclusion of a highly succesful Annotation Workshop

6 June 2008
GBrowse of genome assembly v. 1.0

21 May 2008
Aphid genome publication policy posted here

10 Jan. 2008
Register for the Aphid Genome Annotation Workshop

17 Dec. 2007
Pea aphid genome preliminary assembly available on Aphidbase Blast server

10 Dec. 2007
Aphid stocks available from Moran lab

21 Nov. 2007
Aphid genome annotators meeting

13 Nov. 2007
40,000 new ESTs available in Aphidbase BLAST server



   
   


PLEASE READ THE IAGC POLICY ON PREPUBLICATION DATA ACCESS BEFORE USING THESE RESOURCES

Genome Project Sites
The NCBI pea aphid genome project resource page
HGSC BCM pea aphid genome project resource page
 
Genome Browsers
GBROWSE of genome assembly v. 1.0 at INRA Aphidbase

EST databases
EST database at The University of York - Includes pre-compiled BLAST hits and GO identifiers
BLAST service and aphid ESTs mapped to Drosophila genome
BLAST >94,000 aphid ESTs at NCBI
 
Genomic DNA databases
Aphidbase BLAST gDNA traces aphid ESTs, and v. 1.0 assembly contigs and scaffolds (blastn, tblastn, tblastx)
BLAST gDNA traces at Baylor College of Medicine (blastn, tblastn)
 
Endosymbiont Genomic Resources
Integrated Buchnera Genome Database - University of Tokyo & RIKEN
Buchnerabase - Genomic database for Buchnera aphidicola - University of York
 
Other Genomic Resources
Pea aphid BAC Library - BAC Library used for the genome project from Amemiya lab. Library construction funded by NIH.
Pea aphid stocks available from Moran lab

Genome Annotators Resources
Annotators database - Look here for annotator and annotation group information - Log in as Guest
Aphid genome annotators meeting

Genome Consortium Collaboration WIKI
 
Last Update: 16 July, 2008