Genome
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Pea aphid genome assembly version 2 (fasta)
Pea aphid genome assembly version 1(ftp BCM)
Scaffolds sizes and accessions (txt) |
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Official genes consensus set
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ACYPI proteins v2.1 (fasta)
ACYPI mRNA v2.1 (fasta)
ACYPI OGS v2.1 (gff, gff with CDS ) |
ACYPI proteins v2.0 (fasta)
ACYPI mRNA v2.0 (fasta)
ACYPI OGS v2.0 (gff, gff with CDS )
ACYPproteins v1.0 (fasta, gff)
ACYPmRNA v1.0 (fasta, gff)
ACYPI all v1.0 (gff) |
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Other genes prediction sets (v1.0)
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RefSeq genes (fasta , gff)
RefSeq mRNA (fasta)
RefSeq proteins (fasta)
Gnomon genes part1 (fasta)
Gnomon genes part2 (fasta)
Gnomon mRNA (fasta) |
Gnomon proteins (fasta)
Maker (gff)
GeneID (gff)
Augustus (gff)
Genscan (gff)
Snap (gff) |
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cDNAs
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A. pisum ESt part 1 (gff)
A. pisum ESt part 2 (gff) |
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EST and 454 data from other species
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Myzus454(fasta)
MyzusSanger(fasta)
Toxoptera citricida contigs (fasta)
Aphis gossypii contigs (fasta)
Myzus persicae contigs (fasta)
Toxoptera citricida CDS (fasta)
Aphis gossypii CDS (fasta)
Myzus persicae CDS (fasta)
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Transposable Elements
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| REPET predictions (v1.0) (fasta, gff) |
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Functional annotation of peptides
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| InterproScan results (v2.1) (raw format) |
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| Blast2GO predictions (v2.1) (annot format) |
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Others
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| Scaffolds numbers and accessions (v2)(txt) |
Scaffolds numbers and accessions (v1)(txt) |
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* gff files are as loaded in AphidBase |
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Writing:
FL
Creation date: 20 November 2008
Update: 04 June 2013
